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Release (MATLAB Runtime Version#)WindowsLinuxMac
R2021a (9.10)64-bit64-bitIntel 64-bit
R2020b (9.9)64-bit64-bitIntel 64-bit
R2020a (9.8)
64-bit64-bitIntel 64-bit
R2019b (9.7)
64-bit64-bitIntel 64-bit
R2019a (9.6)
64-bit64-bitIntel 64-bit
R2018b (9.5)
64-bit
64-bit
Intel 64-bit
R2018a (9.4)
64-bit
64-bit
Intel 64-bit
R2017b (9.3)64-bit64-bitIntel 64-bit

Apply Updates to R2016a-R2017a versions of MATLAB Runtime after installing the runtime

Important security fixes are available for the R2016a, R2016b, and R2017a releases of the MATLAB Runtime. After installing the MATLAB Runtime for one of these releases, you should apply the latest Update by clicking on the appropriate Update link below. Note this applies only if your application uses MATLAB apps authored with MATLAB App Designer (.mlapp files). For more information see this bug report.

R2017a (9.2)
64-bit | Update64-bit | UpdateIntel 64-bit | Update
R2016b (9.1)
64-bit | Update64-bit | Update Intel 64-bit | Update
R2016a (9.0.1) 1, 264-bit | Update64-bit | UpdateIntel 64-bit | Update
R2015b (9.0) 1, 2, 332-bit / 64-bit64-bitIntel 64-bit
R2015aSP1 (8.5.1) 132-bit / 64-bit64-bitIntel 64-bit
R2015a (8.5) 132-bit / 64-bit64-bitIntel 64-bit
R2014b (8.4) 132-bit / 64-bit64-bitIntel 64-bit
R2014a (8.3) 132-bit / 64-bit64-bitIntel 64-bit
R2013b (8.2)32-bit / 64-bit64-bitIntel 64-bit
R2013a (8.1)32-bit / 64-bit64-bitIntel 64-bit
R2012b (8.0)32-bit / 64-bit64-bitIntel 64-bit
R2012a (7.17)32-bit / 64-bit32-bit / 64-bitIntel 64-bit
R2011b and earlier 4

Open MATLAB and run the command mcrinstaller to locate MATLAB Runtime for redistribution with your compiled components.

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System Requirements

Operating System: Windows 10 (64-bit); Mac OS X 10.8+; Linux 64-bit
Memory: 2 GB (4+ GB recommended)
Processor: x86

Surface/Volume Registration (SVReg) and the BrainSuite Diffusion Pipeline (bdp) require MATLAB Compiler Runtime (MCR) R2019b (for BrainSuite18b or later) or R2015b (BrainSuite18a or earlier). This file can be downloaded for free from Mathworks here.
The BrainSuite software is distributed as a GUI for Windows, Macintosh OS X, and Linux platforms. Command line programs for cortical surface extraction and diffusion processing are also provided. The related software for Surface/Volume Registration (SVReg) is provided as a collection of command-line programs callable from BrainSuite’s GUI, while the BrainSuite Diffusion Pipeline (BDP) is a command-line only program.

The software may be downloaded here.

Installing on Mac OS X

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Mac OS X Platforms

Note: if you are using MacOS Sierra (10.12), please see this page.

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BrainSuite for Mac OS X is distributed as a disk image (BrainSuite16a1.dmg) file. To install:

  1. Open BrainSuite16a1.dmg and drag the BrainSuite16a1 folder into your Applications folder, as indicated in the pop-up window.
  2. Download and install the 2015b MATLAB Compiler Runtime, available from Mathworks. See the Mathworks MCR page for more details.
  3. Open your Applications folder (or Launch Pad on the dock) and start BrainSuite21a from within the BrainSuite21a folder.
  4. Verify that the program has been installed correctly by checking that no red text warnings appear in the log at the bottom of the BrainSuite window.

Installing on Windows

Windows Platforms

On Windows, the software is distributed as an installer package (BrainSuite21a_win64.exe). To install:

  1. Run BrainSuite21a_win64.exe. This will initiate the BrainSuite Installer.
  2. Follow the instructions for the Setup, indicating the folder in which you would like to save BrainSuite and its shortcuts.
  3. The Setup program will check to see if you have the correct version of the Matlab runtime libraries installed. If you do not, it will offer to download the MATLAB Compiler Runtime for you. Install this, and then continue the setup procedure.
  4. When Setup has finished, launch BrainSuite.
  5. Verify that the program has been installed correctly by checking that no red text warnings appear in the log at the bottom of the BrainSuite window.
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Installing on Linux

Linux Platforms

On Linux, the software is distributed as gzipped tar file (BrainSuite21a.linux.tgz). This file can be installed to whichever location is most appropriate for your system. A typical location, provided you have administrator privileges, would be /opt/BrainSuite16a1/. For individual use, you may want to locate the program in your home directory.

  1. Unzip and untar BrainSuite21a.linux.tgz file. This will create a BrainSuite21a folder which includes the files for CSE, BDP, and SVReg.
  2. This can be done on the command line using

    Note that you can unpack BrainSuite into the /opt directory by using

    sudo tar xvfz BrainSuite21a.linux.tgz -C /opt/
  3. If necessary, move the folder to its desired location. You may need to use sudo to do this.
  4. Download and install the , 2015b MATLAB Compiler Runtime for Linux, available from Mathworks. See the Mathworks MCR page for more details.
  5. To run the GUI on Linux (requires glibc 2.14, glibc++ 3.4.19 or greater), launch BrainSuite16a1 in the bin folder from the terminal, e.g., /opt/BrainSuite16a1/bin/BrainSuite16a1. Doing so will launch the user interface:
  6. We have run the BrainSuite GUI on Ubuntu 14.04LTS, 15.04, and 16.04LTS.
  7. For Ubuntu 12.04LTS, a newer version of glibc++ must be installed. One way to do this is to install g++ 4.8. See this page for details.

    sudo add-apt-repository ppa:ubuntu-toolchain-r/test

    sudo apt-get update

    sudo apt-get install g++-4.8

    Another is to copy a recent version (3.4.19 or greater) of libg++.so to the lib directory inside BrainSuite16a1/bin.

  8. There are a variety of Linux flavors, so if you encounter difficulties with the installation, please visit the BrainSuite forums for assistance.

Building from Source

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We highly recommend using the pre-compiled versions of BrainSuite, which have been tested for cross-platform compatibility. If you do wish do build the software from the source code, instructions for how to do this are provided on this page.